Great Kit From Qiagen for Bacterial Plasmid DNA Extraction

The University of Texas Medical Branch at Galveston
Biochemistry and Molecular Biology Department
Graduate Student

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Ease-of-Optimization

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Company:

Qiagen

Product Name:

QIAprep Spin Miniprep Kit

Catalog Number:

27106

We use this kit daily in my lab. Simple and fast, it yields high-quality DNA for any downstream applications. After the transformation of TOP10 E. coli competent cells, I picked 3 colonies for confirmation by Sanger sequencing. Colonies were inoculated in 3 mL of LB medium and incubated at 37 °C, 220 rpm for 6 h. After that, I proceeded to plasmid extraction. My plasmid is 14 kb long, a Dengue virus infectious clone. Using this kit, I can extract DNA in less than 30 minutes. I usually follow the supplier's protocol. The bacteria cells were centrifuged and resuspended in 250 uL of Buffer 1, and mixed with 250 uL of Buffer 2. I usually incubate my samples at room temperature for 3 minutes in this step, to allow cell lysis. Next, I added 350 uL of Buffer 3 and centrifuged the samples for 10 min at 13000 rpm. Finally, I pass my lysate through the column using a vacuum manifold and wash the column with Buffer PE (which contains ethanol). I eluted my DNA in 35 uL of deionized water. DNA concentration was 185 ng/uL, which I considered a good amount considering a 3 mL culture that grew for 6 hours. 260/280 ratio was also good. Overall, it is a good and reliable kit.

Experimental Design and Results Summary

Application

Plasmid DNA extraction

Starting Material

Bacteria culture

Tips

After washing step with Buffer PE, I usually let my samples dry for 5 minutes to let ethanol evaporate. If you have a heating block, you can set it to 50 °C and place your columns there for 3-5 min. Always pre-heat your elution solution (water or elution buffer) to 60 °C and after adding to the column, incubate your samples for 3-5 min before centrifuging, as this allows more DNA to be eluted from the column. Also, if your concentration is low, you can pass your DNA a second time through the same column, as a second centrifugation step can get more DNA out of the column.

Results Summary

Plasmid DNA was extracted with a concentration of 185 ng/uL and good 260/280 ratio, indicating that DNA was free of contaminants.

DOI or PMID #

N/A

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Summary

The Good

Fast, consistent and reliable results.

The Bad

None.

The Bottom Line

Overall, I recommend this kit. I have always used it and it does a great job for DNA extraction.

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