Wizard SV Gel and PCR Clean-Up System from Promega

Overall

Quality of Results

Ease-of-Optimization

What do these ratings mean?
Write a Review
Leiden University Medical Center
Hematology
Senior Researcher

Absorbance readings of several samples processed with the Wizard SV PCR Clean-Up System.

Company:

Promega

Product Name:

Wizard® SV Gel and PCR Clean-Up System

Catalog Number:

A9281

Image

We frequently need to purify 2 – 3 Kb PCR products in order to prepare an insert for downstream cloning into particular vectors. There are many solutions available on the market, but at the current time with shrinking budgets, I decided to try more economic alternatives to our standard kit. The product I choose was the Promega SV Gel and PCR Clean-Up System. Although the manufacturer’s protocol needed to be adapted a bit in order to improve the DNA quality, I was greatly surprised with the results.

Experimental Design and Results Summary

Application

DNA clean-up for cloning

Starting Material

2 – 3 Kb PCR products

Protocol Overview

I amplify constant regions from murine immunoglobulins and variable regions from human B cells. After performing a fusion PCR of the amplicons, appropriate sticky ends are generated with EcoRI and XohI restriction enzymes. Since the buffer used in the PCR is not compatible with the optimal cutting conditions of the restriction endonucleases, the PCR products need to be cleaned and eluted with ddH20. Therefore a quick clean-up system is an ideal solution. After successful clean-up and digestion, the insert needs to be ligated into an expression vector. Again, in order to eliminate the endonucleases and to avoid buffer incompatibilities with the (T4) ligase, the insert needs to be cleaned once again. This illustrates once again the need for a fast and reliable system to purify the precious DNA. The procedure is very simple and involves 3 steps: 1) binding of the DNA to a membrane, 2) washing, and 3) elution. In the recommended manufacturer protocol each step takes between 3 and 7 minutes and the entire protocol can be completed in a total time of about 15 minutes. In my experience, the results of the provided protocol can be improved by adding an additional washing step.

Tips

An additional washing step of 1 min at 16g with 500 ml of washing buffer can greatly improve the quality of the DNA.

Results Summary

Overall, the Wizard SV Gel and PCR Clean-Up System performed very well; it was fast, reliable and inexpensive. The protocol was simple and resulted in high quality DNA, as evidenced by spectrophotometry analysis and successful subcloning. The figure shows the absorbance of several samples processed with the Wizard SV PCR Clean-Up System.

Additional Notes

We have also successfully used this kit for clean-up of gel slice bands.

Related Categories

Image Gallery

Absorbance readings of several samples processed with the Wizard SV PCR Clean-Up System.

Summary

The Good

A very simple, fast and inexpensive method of purifying PCR products or restriction enzyme digests.

The Bad

Initial DNA purity is not optimal with the manufacturer’s protocol.

The Bottom Line

A nice time and labor saver for daily molecular cloning.

Join the discussion