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PaqCI
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PaqCI
PaqCI from New England Biolabs
Be the first to write a review!
Citations:
(27)
$107.00 Inquire
from
New England Biolabs for
PaqCI
Product Specs
Company Info
Citations
Reviews
Product Specs
Item
PaqCI
Company
New England Biolabs
Price
$107.00 Inquire
Catalog Number
R0745S
Size
200 units
Type
Restriction Enzyme
Applications
DNA Manipulation
Temperature
-20 C
Add to Compare List
New England Biolabs
240 County Road
Ipswich
,
Massachusetts
1938
United States
Phone
: 800-632-5227
800-632-7799
978-921-1350
Company Profile
Website:
http://www.neb.com
Citations (27)
(1)
Phage-assisted evolution of allosteric protein switches
Nat Commun
April 14, 2026
Nicholas T. Southern, Anna von Bachmann, Alisa Hovsepyan, Marielouise Griebl, Benedict Wolf, Nina Lemmen, Ann-Sophie Kroell, Simon Westermann, Jan Mathony, Dominik Niopek
(
New England Biolabs
, cat. no.
R0734S
),
BsaI-HF
®v2 (
R3733S
),
BbsI
(
R0539S
),
SapI
(
R0569S
), and
PaqCI
® (
R0745S
). Plasmids were assembled via Golden Gate
cloning
. Plasmids were purified using the QIAprep Spin Miniprep
(2)
Modular gene tagging in C. elegans
Research Square
February 10, 2026
Erik Jorgensen, Kevin Hefel, Kevin Kruse, Soren B. Jorgensen, Kam Hoe Jorgensen, Ryan Stolley, Matthew S. Stolley, Matthew Jorgensen
pAJH93, a 20 μL mix of 2 μL T4 ligase buffer (
NEB
® B0202), 2 μL T4 ligase (NEB®,
M0202
), 2 μL
PaqCI
(
NEB
®
R0745
), 2 μl
PaqCI
activator (NEB® S0532), 0.1 pmol of each plasmid, 0.3 pmol of annealed oligos, and water
(3)
Stepwise DNA unwinding gates TnpB genome-editing activity
bioRxiv
January 28, 2026
Zehan Zhou, Iren Saffarian-Deemyad, Honglue Shi, Trevor Weiss, Muhammad Moez ur-Rehman, Kamakshi Vohra, Petr Skopintsev, Peter H. Yoon, Marena I. Trinidad, Conner J. Langeberg,
et al.
(
New England Biolabs
, R3539),
BsmBI
(
New England Biolabs
,
R0739
), and
PaqCI
(AarI;
New England Biolabs
,
R0745
) in combination with
T4 DNA Ligase
(
New England Biolabs
,
M0202
). Gibson assemblies were performed with
(4)
Modular gene tagging in C. elegans
bioRxiv
January 18, 2026
Adam Hefel, Kevin Kruse, Kaden Wall, Soren B. Jorgensen, Kam Hoe Ng, Ryan Stolley, Matthew S. Rich, Erik M. Jorgensen
pAJH93, a 20 μL mix of 2 μL T4 ligase buffer (
NEB
® B0202), 2 μL T4 ligase (NEB®,
M0202
), 2 μL
PaqCI
(
NEB
®
R0745
), 2 μl
PaqCI
activator (NEB® S0532), 0.1 pmol of each plasmid, 0.3 pmol of annealed oligos, and water
(5)
A programmable ribozyme for RNA signal transduction
Nature Communications
January 10, 2026
Mandy Yu Theng Lim, Chermaine Tan, Charannya Sozheesvari Subhramanyam, Shi Jie Teo, Louis DeFalco, Samuel Kevin Pasaribu, Chong Hui Koh, Dheeraj Rayamajhi, Jieying Chi, Shengnan Li,
et al.
obtain the linearised DNA template for IVT, the sequence-verified plasmid was digested with
PaqCI
(#
R0745L
,
New England Biolabs
, USA) and gel-isolated with the FavorPrep™ GEL/PCR Purification Kit. Ribozyme
(6)
Biology of host-dependent restriction-modification in prokaryotes
EcoSal Plus
December 16, 2025
Brian P. Anton, Robert Blumenthal, James B. Eaglesham, Iwona Mruk, Richard J. Roberts, Shuang-yong Xu, Peter R. Weigele, Elisabeth A. Raleigh
the common requirement for a “bystander oligonucleotide” (e.g., the
PaqCI
activator provided with
NEB
R0745
, and discussion of two-site enzymes [see https://www.neb.com/en-us/nebinspired-blog/using-paqci-for-golden-gate-assembly]). An
(7)
High-resolution spatial mapping of cell state and lineage dynamics in vivo with PEtracer
Science
October 16, 2025
Luke W. Koblan, Kathryn E. Yost, Pu Zheng, William N. Colgan, Matthew G. Jones, Dian Yang, Arhan Kumar, Jaspreet Sandhu, Alexandra Schnell, Dawei Sun,
et al.
backbones can then be used for a second
cloning
step using the Type IIS restriction enzyme
PaqCI
(
NEB
,
R0745L
) for the final 24-mer assembly. The overhangs for the 8-mer assembly are the same for each of 8-mer
(8)
Systematic discovery of CRISPR-boosted CAR T cell immunotherapies
Nature
September 24, 2025
Paul Datlinger, Eugenia V. Pankevich, Cosmas D. Arnold, Nicole Pranckevicius, Jenny Lin, Daria Romanovskaia, Moritz Schaefer, Francesco Piras, Anne-Christine Orts, Amelie Nemc,
et al.
CROPseq_REV_019 (Supplementary Table 1i), followed by
DpnI
digestion.
PCR
products were digested with
PaqCI
(
NEB
,
R0745S
), heat inactivated and cleaned with the Monarch
PCR
& DNA Cleanup Kit (
NEB
,
T1030
). The purified
PCR
(9)
Comprehensive profiling of activity and specificity of RNA-guided transposons reveals opportunities to engineer improved variants
Nucleic Acids Research
September 23, 2025
Seong Guk Park, Jung-Un Park, Esteban Dodero-Rojas, John A Bryant, Geetha Sankaranarayanan, Elizabeth H Kellogg
TnsC fragment using
SapI
and
T4 DNA ligase
. Next, barcode fragments were assembled using
PaqCI
(
NEB
,
R0745L
) and
T4 DNA ligase
. The barcoded TnsC library was digested with
PacI
(
NEB
,
R0547L
) and sent to the Hartwell
(10)
Model-guided design of microRNA-based gene circuits supports precise dosage of transgenic cargoes into diverse primary cells
Cell Systems
June 18, 2025
Kasey S. Love, Christopher P. Johnstone, Emma L. Peterman, Stephanie Gaglione, Michael E. Birnbaum, Kate E. Galloway
transcriptional units were then combined with a backbone vector and a 200-bp spacer via
PaqCI
(
NEB
,
R0745L
) Golden Gate
cloning
to construct the lentiviral and PiggyBac integration vectors. The lentiviral backbone
(11)
Viral delivery of an RNA-guided genome editor for transgene-free germline editing in Arabidopsis
Nature Plants
April 22, 2025
Trevor Weiss, Maris Kamalu, Honglue Shi, Zheng Li, Jasmine Amerasekera, Zhenhui Zhong, Benjamin A. Adler, Michelle M. Song, Kamakshi Vohra, Gabriel Wirnowski,
et al.
site were phosphorylated and annealed. Then, the annealed double-stranded DNA was used in a
PaqCI
(
R0745S
) golden-gate reaction with the pMK435 ccdb intermediate vector (Supplementary Table 8). The golden-gate
(12)
Effective recognition of double-stranded RNA does not require activation of cellular inflammation
Sci Adv
April 11, 2025
Karolina Drazkowska, Julia Cieslicka, Michal Kitowicz, Anna Pastucha, Lukasz Markiewicz, Wiktoria Szymanek, Krzysztof Goryca, Tomasz Kowalczyk, Dominik Cysewski, Andreas R. Bausch,
et al.
(36, 39) with some modifications. A pJET-based construct linearized with PacQI (
New England Biolabs
,
R0745
) restrictase served as a template for
in vitro transcription
. The reaction mixture contained RNA Pol
(13)
Antigenic drift expands influenza viral escape pathways from recalled humoral immunity
Immunity
March 11, 2025
Daniel P. Maurer, Mya Vu, Aaron G. Schmidt
such that the whole plasmid could be assembled in a one-pot golden gate reaction with
PaqCI
(
NEB
, #
R0745S
). Due to repeated regions, we found it necessary to propagate this plasmid in NEB Stable
E. coli
(
NEB
,
(14)
Evaluation of Cas13d as a tool for genetic interaction mapping
Nat Commun
February 14, 2025
Ghanem El Kassem, Jasmine Hillmer, Michael Boettcher
VCR1L were selected to avoid recombination48. The pMB1 plasmid was digested with
PaqCI
and
NheI
(
NEB
,
R0745S
, R0131) and the linear plasmid was purified from a 1% agarose gel.
Gene fragments
with Gibson assembly
(15)
An in vivo CRISPR screen in chick embryos reveals a role for MLLT3 in specification of neural cells from the caudal epiblast
Development
February 1, 2025
Ashley R. G Libby, Tiago Rito, Arthur Radley, James Briscoe
France) and RARα sequences were
PCR
amplified with primers adding
PaqCI
cut sites (
New England Biolabs
,
R0745S
), cut via
PaqCI
and ligated into an EF1alpha-mScarlet backbone (Zhang et al., 2024 preprint).
Clones
(16)
Improved gene editing and fluorescent-protein tagging in Aspergillus nidulans using a Golden Gate-based CRISPR-Cas9 plasmid system
Wellcome Open Research
October 17, 2024
Domenico Modaffari, Aimée Finlayson, Yuyang Miao, Edward W. J. Wallace, Kenneth E. Sawin
UK).
CRISPR-Cas9
plasmids containing sgRNA spacer sequences were assembled by Golden Gate Reaction using
PaqCI
(#
R0745
,
New England Biolabs
, USA). 60bp-long complementary oligonucleotides were annealed by mixing 2.5 µL
(17)
Pythia: Non-random DNA repair allows predictable CRISPR/Cas9 integration and gene editing
bioRxiv
September 27, 2024
Thomas Naert, Taiyo Yamamoto, Shuting Han, Melanie Horn, Phillip Bethge, Nikita Vladimirov, Fabian F. Voigt, Joana Figueiro-Silva, Ruxandra Bachmann-Gagescu, Fritjof Helmchen,
et al.
Linearization was performed by overnight digest at 37C° of 10 μg of donor plasmid using 20 Units of
PaqCI
(
R0745
,
NEB
) in 1x
rCutSmart buffer
(
B6004S
,
NEB
). Complete linearization was ensured via classical
agarose gel electrophoresis
(18)
Model-guided design of microRNA-based gene circuits supports precise dosage of transgenic cargoes into diverse primary cells
bioRxiv
July 13, 2024
Kasey S. Love, Christopher P. Johnstone, Emma L. Peterman, Stephanie Gaglione, Kate E. Galloway
transcriptional units were then combined with a backbone vector and a 200-bp spacer via
PaqCI
(
NEB
,
R0745L
) Golden Gate
cloning
to construct the lentiviral and PiggyBac integration vectors. The lentiviral backbone
(19)
An integrated technology for quantitative wide mutational scanning of human antibody Fab libraries
Nature Communications
May 10, 2024
Brian M. Petersen, Monica B. Kirby, Karson M. Chrispens, Olivia M. Irvin, Isabell K. Strawn, Cyrus M. Haas, Alexis M. Walker, Zachary T. Baumer, Sophia A. Ulmer, Edgardo Ayala,
et al.
plus 3 μL
PaqCI
activator (diluted from 20 μM stock
1:4
in 1X T4 DNA ligase buffer) (
NEB
; catalog #
R0745L
) - for
ligation
of barcode to VH. The reaction was subjected to 60 cycles of 37 °C for one minute followed
(20)
De novo -designed minibinders expand the synthetic biology sensing repertoire
bioRxiv
January 19, 2024
Zara Y. Weinberg, Sarah S. Soliman, Matthew S. Kim, Irene P. Chen, Melanie Ott, Hana El-Samad
assembled into pMK1101 via a
PaqCI
reaction following manufacturer instructions (
New England Biolabs
#
R0745S
). All plasmids were propagated in Stbl3
E. coli
(QB3 MacroLab). Domestication was verified via
sequencing
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PaqCI from New England Biolabs
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