Fig 1: (A) The tertiary structure of the antigenic domain of CA125 and its (B) complex with aptamer 2.26. (C) Molecular dynamics simulation of CA125 alone as well as in complex with Apt 2.26 and reported aptamer, respectively.
Fig 2: (A) Visual detection of CA125 at its gradually increasing concentrations in competitive format through NALFA where 10 μM aptamer was immobilized on NC laminate, and AuNPs- CA125 conjugate was applied on a reservoir matrix. The assay was run using varying concentrations (0–200 U/mL) of CA125 in 0.1 M phosphate buffer as the test sample. (B) Quantification of NALFA using ImageJ software by calculating average RGB intensities.
Fig 3: Binding study of CA125 with aptamer 2.26 using (A) Dot ELASA where CA125 was immobilized on nitrocellulose membrane, blocked, and then incubated with biotinylated apt2.26 followed by incubation with streptavidin-HRP. DAB/H2O2 was used as a peroxidase substrate resulting in a brown colored product. (B) NALFA (N = 4 for both assays) where 10 μM aptamer was immobilized on NC laminate, and AuNPs- CA125 conjugate was applied on a reservoir matrix. The assay was run using PBS containing BSA and Tween-20.
Fig 4: Apt 2.26-CA125 binding using differential pulse voltammetry.
Fig 5: Serum stability profiling: (A) PCR amplified DNA and (B) its single-stranded form before amplification, after treatment with 50%v/v normal human female serum. Effect of different salt concentrations on aptamer-CA125 binding: (C) negative controls and (D) treated aptamer (lane 1: ladder, lane 2: 0.2 M NaHCO3 with 0.5 M NaCl, lane 3: 100 mM NaCl and 5 mM MgCl2, lane 4: milli-Q water as positive control; (E) Binding—saturation curve for determination of KD. The original gel images have been provided in Figures S4, S5.
Supplier Page from R&D Systems, a Bio-Techne Brand for Recombinant Human CA125/MUC16 Protein, CF