Good antibody for ChIP assay of MeCP2 binding DNA sequence

Department of Biological Sciences
Stanford University
Postdoc

Overall

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Ease-of-Optimization

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Company:

Cell Signaling Technology

Product Name:

MeCP2 (D4F3) XP ® Rabbit mAb from Cell Signaling Technology

Catalog Number:

3456P

Info: View Product View Product Specs

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The long-term goal of our lab is to understand the molecular and genetic mechanisms underlying brain development and disases. ‍My focus of work is studying the critical role of MeCP2 (methyl-CpG binding protein 2), whose mutation causes Rett Syndrome, in the development and function of the nervous system. I discovered a novel phosphorylation site on MeCP2, therefore I want to test whether this phosphorylation modulates activity-dependent binding of MeCP2 to the target DNA. As a first step in this study, I established the experiment of DNA-protein binding upon membrane depolarization, Cell Signaling's MeCP2 antibody was used for MeCP2 ChIP assay.

Experimental Design and Results Summary

Applications

ChIP

Sample

Mouse cortical neurons

Primary Incubation

4ug per ChIP sample for 12 hours at 4°C

Blocking Agent

3% BSA, 50mM blocking DNA and 0.1% Triton 100 in TBS buffer

Secondary Incubation

NA

Tertiary Incubation

NA

Detection

Real-time PCR

Results Summary

MeCP2 strongly binds to exon IV of bdnf gene, and weakly binds to exon VI. Upon KCl-induced membrane depolarization, MeCP2 is released from the exon IV, suggesting the this process is activity-dependent.

Additional Notes

None

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Summary

The Good

Easy to use

The Bad

None

The Bottom Line

The antibody can enrich MeCP2-binding DNA sequence in ChIP assay.

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