Fig 1: Riox1 and Riox2 gene structures. a The human RIOX2 gene exhibits ten exons distributed on chromosome 3. The exon lengths are indicated. The RIOX2 protein domains (JmjC, dimerization, WH) were mapped on the gene. b The human RIOX1 gene is a single exon gene of 1962 bases on chromosome 14. The RIOX1 protein domains (JmjC, dimerization, WH) were mapped on the gene. c Analysis of the genomic structures of Riox2 and Riox1 genes in H. sapiens, M. musculus, G. gallus, X. laevis, D. rerio, C. elegans, D. melanogaster and H. vulgaris with the number of exons are given in the Table. C. elegans and D. melanogaster lack a Riox1 gene. The Riox2 genes of human (Hs), mouse (Mm) and chicken (Gg) exhibit one non-coding exon (5’) and nine coding exons
Fig 2: Riox1 and Riox2 expression in Hydra. a Alignment of both Hydra sequences, with highlighted iron-binding motif (HxD…H) (green) and predicted lysine-residue for 2OG binding (blue). b, c Expression of GFP-tagged HyRiox1 in Hydra animals displayed nuclear localisation and strong accumulation in nucleoli. d, e HyRiox2 is also localised in nuclei, but an accumulation in nucleoli is not detectable. DNA-stain: DAPI. Scalebar: 10 µm
Fig 3: Nuclear localisation of Riox1 and Riox2. The N-terminal extension domain of human RIOX1 has been shown to harbour the nuclear localisation signal (NLS) [28]. a Expression of GFP-tagged full-length RIOX1 in HeLa cells resulted mainly in nucleolar accumulation. b A RIOX1 deletion mutant lacking aa 1–31 localised to the cytoplasm. c Fusion of aa 1–45 of human RIOX1 resulted in nuclear GFP localisation with strong accumulation in the nucleoli. DNA stain: DAPI. Scalebar: 5 µm. d Predictions of NLS in Riox1 of other species with either NLSmapper (blue) or NLStradamus (pink) identified NLS in the N-terminal extension domains of Riox1, whereas for Riox2 no NLS were predicted
Fig 4: The ribosomal oxygenases (ROXs) are a subgroup of Fe(II) and 2OG-dependent oxygenases that modify the ribosome and are present in pro- and eukaryotes. a The human ROXs RIOX2/MINA53 and RIOX1/NO66 hydroxylate histidine residues in the ribosomal proteins RPL27A and RPL8, respectively, whereas (b) the E.coli ycfD protein hydroxlyates an arginine in Rpl16 [6]. Protein sequence and crystal structure analyses confirmed a similar protein-domain architecture for the three proteins [16]. c They consist of a JmjC-domain (red), a dimerization domain (brown) for homo-oligomerization and a winged-helix (WH) domain (blue). The aa triad HxD…H that coordinates the iron and is essential for catalytic activity is indicated in green (c)
Fig 5: Phylogenetic relationship of Riox1 and Riox2 JmjC domain sequences in Metazoa. Riox1- and Riox2-JmjC domain sequences from species used in this study were extracted from full-length protein sequences, aligned using ClustalW and maximum-likelihood analysis used for tree construction (IQ-TREE). The tree shown is a consensus tree with SH-like aLRT and ultrafast bootstrap (UFboot) values (numbers in parentheses SH-aLRT support (%)/ultrafast bootstrap support (%)) given as branch support values. Good branch support is confirmed with SH-aLRT > = 80% and UFboot > = 95%. The Tree is unrooted although the outgroup taxon ‘Trichoplax’ is drawn at root. The scale bar indicates 1.00 substitutions per site. The JmjC-domain of the E. coli ycfD ribosomal oxygenase (ecycfD) was included in the alignment to analyse its phylogenetic relationship to metazoan Riox1 and Riox2 proteins (indicated in red). Riox2-JmjC domain branch is highlighted with grey background shading to show its separate branch node relationship to Riox1-JmjC domains. Note, Riox2 is also present in Hydra vulgaris and Priapulus caudatus which both possess Riox1 and Riox2 orthologous genes as invertebrates. Species with a Riox1 gene, but which lack a Riox2 gene are highlighted in red
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