Tools Used by Emory Oncology Lab for Analyzing Brain Tumors
Dr. Debra Saxe
Wednesday, August 3, 2016
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Chapters
Introduction
706 Microarrays by Disease 8/2013-3/2016
Oncoscan: 488 Cases
434 Brain Tumors
Analysis Tools for Brain Tumors
Comparison of Somatic Mutations
Mutations not Reported
Chart 1
Chart 2
Genetic Abnormalities in CNS Tumors for CGC Study Group
Emory Cases BED file
Case BED File: Sorted for deletion 6q in Glial tumors, 44 cases
Case 1: 63 year old male with left frontal brain lesion
Summary: IDH1 mutation and confirmed by snapshot cancer gene panel
Loss 1p (RUNX3,ARID1A, WASF2,HDAC1) | Mosaicism for Loss of 3p and 3q
Complex loss 4 and Loss 6q ROS1, MYB, QKI
Loss of 9p showing CHAS tracts and BED files
CN-LOH 13 RB1 and 17p GPS2, TP53, NCOR1
Case BED File: Sorted for deletion 6q in Glial tumors, 44 cases
Genetic Abnormalities in CNS Tumors for CGC Study Group
Interpretation
Acknowledgements
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