Spectral Unmixing of Indocyanine Green In the
Vascular Network of a Sycamore Leaf
Bryan A. Smith,a W. Matthew Leevya
Author Information: aDepartment of Chemistr y and Biochemistr y, 236 Nieuwland
Science Hall, University of Notre Dame, Notre Dame, IN
46556 USA
Application Overview
The vascular network of a leaf is essential for providing
transport and mechanical support. Leaf venation patterns
progress throughout growth, during which a hierarchy of
discrete vein-size classes being to develop.1 Vein classes
are designated by the width of the veins at their point of
branching, with higher-order veins exhibiting narrower
widths than lower-order veins. Leaf vasculature varies
between species; thus, understanding how these venation
patterns develop could have important implications for
understanding both plant physiology and evolution.2
Traditional strategies for investigating leaf vein patterning
include genetic modification,3 pharmacological methods,4
and theoretical modeling.5 In this study, we tested the
ability of a near-infrared dye, indocyanine green, to label
the vasculature network of a sycamore leaf to allow for
facile identification of the leaf architecture.
Imaging Protocol and Biological Model
Indocyanine green (ICG) is a near-infrared cyanine dye that
is FDA approved for determining cardiac output, hepatic
function, and liver blood flow, as well as for ophthalmic
angiography.6 ICG exhibits a λ max at 775-803 nm and
emits between 820-830 nm, depending on its association
with plasma proteins. The near infra-red (NIR) region of
light (650-900 nm) offers an “optical window” for
fluorescence imaging in complex biological systems, which
is due to minimal light absorption by endogenous
molecules and increased tissue penetration. In plants,
however, there are a significant number of fluorophores that
contribute to the autofluorescence even in the NIR; thus,
making spectral unmixing critical in plant tissues even into
the NIR.

To investigate leaf venation patterns, researchers often
utilize Arabidopsis leaves. Arabidopsis plants are the
preferred model for studying plant vasculature given that
the entire genome of some strains has been sequenced. This
allows researchers to genetically modify proteins with
fluorescent reporters to examine spatial and temporal
protein expression during vasculature development. These
fluorescent-engineered plant proteins are also used as leaf
vein biomarkers to identify venation patterns.7
Fluorescence imaging is performed using either
histochemistry or confocal laser-scanning microscopy,
which involves processing or fixing of plant tissue. Here,
we used a much larger sycamore leaf and showed that the
vasculature can easily be identified through macroscopic,
epi-fluorescence imaging without the need for genetic or
physical manipulation.
Imaging Protocol
Fluorescence Imaging
A sycamore leaf (Platanus occidentalis) was cut at the base
of the stem. The stem was then placed into a vial
containing 800 mL of ICG (1 mM in water). Twenty-four
hours later, the leaf was imaged using a Carestream In-
Vivo Multispectral Imaging System FX PRO (Carestream
Molecular Imaging; Woodbridge, CT USA).
Spectral Unmixing
Using the Carestream In-Vivo Multispectral Imaging
System FX PRO, the sycamore leaf was illuminated with
filtered light at 650, 670, 690, 700, 710, 720, 730, and 750
± 10 nm. Fluorescence emission was captured using a
CCD camera equipped with an 830 ± 20 nm emission filter
(f-stop = 2.51, FOV = 190 mm, binning = 2, 30 second
image acquisition). Acquired images were opened in
Carestream Multispectral software (Carestream Molecular
Imaging; Woodbridge, CT USA). Emission-based spectra
were modeled and assigned for both the leaf
autofluorescence and ICG. The assigned spectra were
unmixed and the fluorescence signals representing
autofluorescence, and ICG were pseudocolored as “Green”
and “Magenta,” respectively.

Discussion of Imaging Results and
Associated Image Analysis
Macroscopic,epi-fluorescence images showed
fluorescence emanating from both the leaf tissue and
vasculature. To delineate the leaf autofluorescence from
ICG signal, the different emission-based spectra were
unmixed (Figure 1). The fluorescence images representing
both the leaf autofluorescence and ICG were
pseudocolored. Figure 2 shows that ICG effectively
labeled the leaf vasculature, allowing for identification of
venation patterns within the leaf. The highest fluorescence
intensities, as depicted by the white color, could be seen in
the primary veins with higher order veins branching off
(Figure 2, panel 2). The ICG fluorescence could
ultimately be used to quantify venation patterns such as
vein density, free vein endings, vein loops, and the number
of vein branch points.2 This information would be vital for
linking experimental and theoretical models of vascular
patterning in leaves. In addition, the ability to separate
different fluorescence spectra from an image could be
useful for simultaneously monitoring expression of
multiple-vasculature proteins or detecting the spatial
location of a protein in relation to the entire vasculature
network.
References
- Kang, J.; Dengler, N. Int. J. Plant Sci. 2004, 165, 231-242.
-
Rolland-Lagan, A.; Amin, M.; Pakulska, M. Plant J. 2009, 57,
195-205.
-
Cnops, G.; Neyt, P.; Raes, J. et al. Plant Cell 2006, 18, 852-
866.
-
Wenzel, C. L.; Schuetz, M.; Yu, Q.; Mattsson, J. Plant J. 2007,
49, 387-398.
-
Feugier, F. G.; Iwasa, Y. J. Theor. Biol. 2006, 243, 235-244.
-
“Indocyanine green” National Cancer Institute. http://www.cancer.gov/Templates/drugdictionary.aspx?CdrID=540122.
-
Scarpella, E.; Marcos, D.; Friml, J.; Berleth, T. Gene Dev. 2006, 20, 1015-1027.